Variant report

Variant	rs2544398
Chromosome Location	chr4:106799485-106799486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106780950..106782455-chr4:106798571..106801151,2	MCF-7	breast:
2	chr4:106798138..106799969-chr4:106818933..106821674,2	MCF-7	breast:
3	chr4:106780531..106782678-chr4:106796997..106799530,3	K562	blood:

Variant related genes	Relation type
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10516523	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs11722731	0.82[CHB][hapmap]
rs11933386	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11933393	0.95[ASN][1000 genomes]
rs11933466	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11934139	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs11941690	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs12639750	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs1294670	0.85[EUR][1000 genomes]
rs1294673	0.84[EUR][1000 genomes]
rs13120110	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13148869	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs17262764	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs2080789	0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs2544395	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2544400	0.97[ASN][1000 genomes]
rs2544404	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2544405	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2544406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2544408	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2544409	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2544410	0.97[ASN][1000 genomes]
rs2544412	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2544413	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2544423	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2544425	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2553432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2553434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2553436	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2553437	0.87[ASN][1000 genomes]
rs2553438	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2553440	0.81[ASN][1000 genomes]
rs2553441	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553445	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2553453	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2553454	0.95[ASN][1000 genomes]
rs2553458	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553462	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553468	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553472	0.95[ASN][1000 genomes]
rs28628106	0.81[EUR][1000 genomes]
rs3756260	0.81[EUR][1000 genomes]
rs4456959	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4579125	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4600917	1.00[YRI][hapmap]
rs4699196	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs6533218	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6533221	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6811135	1.00[YRI][hapmap]
rs6820200	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs7684839	0.82[CHB][hapmap]
rs7685231	0.82[CHB][hapmap]
rs7690167	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106815800	Weak transcription	Aorta	Aorta
2	chr4:106797200-106799800	Weak transcription	Left Ventricle	heart
3	chr4:106797200-106799800	Weak transcription	Psoas Muscle	Psoas
4	chr4:106797200-106799800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:106799400-106800000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:106799400-106800800	Enhancers	Fetal Heart	heart

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