Variant report
| Variant | rs2553454 |
|---|---|
| Chromosome Location | chr4:106809483-106809484 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:106809145..106811967-chr4:106812559..106814287,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11722731 | 0.81[EUR][1000 genomes] |
| rs11933386 | 0.96[ASN][1000 genomes] |
| rs11933393 | 0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11933466 | 0.96[ASN][1000 genomes] |
| rs2544398 | 0.95[ASN][1000 genomes] |
| rs2544400 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2544404 | 0.93[ASN][1000 genomes] |
| rs2544405 | 0.81[ASN][1000 genomes] |
| rs2544406 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2544408 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2544409 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2544410 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2544421 | 0.96[ASN][1000 genomes] |
| rs2544423 | 0.98[ASN][1000 genomes] |
| rs2544425 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2553432 | 0.98[ASN][1000 genomes] |
| rs2553434 | 0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2553436 | 0.86[ASN][1000 genomes] |
| rs2553437 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2553438 | 0.93[ASN][1000 genomes] |
| rs2553440 | 0.83[ASN][1000 genomes] |
| rs2553441 | 0.82[ASN][1000 genomes] |
| rs2553453 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2553472 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6533221 | 0.86[ASN][1000 genomes] |
| rs7690167 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014993 | chr4:106796019-106980727 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:106792200-106815800 | Weak transcription | Aorta | Aorta |
