Variant report

Variant	rs2553472
Chromosome Location	chr4:106802601-106802602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106800923..106802785-chr4:106816136..106818564,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11933386	1.00[ASN][1000 genomes]
rs11933393	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933466	1.00[ASN][1000 genomes]
rs13120110	0.81[ASN][1000 genomes]
rs2544398	0.95[ASN][1000 genomes]
rs2544400	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2544404	0.96[ASN][1000 genomes]
rs2544405	0.84[ASN][1000 genomes]
rs2544406	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2544408	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2544409	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544410	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2544412	0.81[ASN][1000 genomes]
rs2544413	0.81[ASN][1000 genomes]
rs2544421	1.00[ASN][1000 genomes]
rs2544423	0.98[ASN][1000 genomes]
rs2544425	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2553432	0.98[ASN][1000 genomes]
rs2553434	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2553436	0.89[ASN][1000 genomes]
rs2553437	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2553438	0.96[ASN][1000 genomes]
rs2553440	0.86[ASN][1000 genomes]
rs2553441	0.86[ASN][1000 genomes]
rs2553453	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2553454	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533218	0.81[ASN][1000 genomes]
rs6533221	0.86[ASN][1000 genomes]
rs7667055	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7690167	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106815800	Weak transcription	Aorta	Aorta

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