Variant report

Variant	rs2544404
Chromosome Location	chr4:106793618-106793619
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106779895..106782052-chr4:106793000..106795244,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10516523	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs11722731	0.90[CHB][hapmap]
rs11933386	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11933393	0.96[ASN][1000 genomes]
rs11933466	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11934139	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes]
rs11941690	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs12639750	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs1294670	0.85[EUR][1000 genomes]
rs1294673	0.84[EUR][1000 genomes]
rs13120110	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13148869	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes]
rs17036098	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs17262764	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[EUR][1000 genomes]
rs2080789	0.91[CHB][hapmap];0.89[EUR][1000 genomes]
rs2544395	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs2544398	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2544400	0.95[ASN][1000 genomes]
rs2544405	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544406	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2544408	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2544409	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2544410	0.95[ASN][1000 genomes]
rs2544412	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2544413	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544421	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544423	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2544425	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2553432	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2553434	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2553436	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2553437	0.88[ASN][1000 genomes]
rs2553438	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2553440	0.86[ASN][1000 genomes]
rs2553441	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2553445	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2553449	0.82[CHB][hapmap]
rs2553453	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2553454	0.93[ASN][1000 genomes]
rs2553458	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553462	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553468	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553472	0.96[ASN][1000 genomes]
rs28628106	0.81[EUR][1000 genomes]
rs3756260	0.81[EUR][1000 genomes]
rs4456959	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4579125	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4600917	0.82[YRI][hapmap]
rs4699196	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs6533218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6533221	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6820200	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs7684839	0.91[CHB][hapmap]
rs7685231	0.90[CHB][hapmap]
rs7690167	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106793800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:106792200-106815800	Weak transcription	Aorta	Aorta
3	chr4:106792800-106794000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:106792800-106794000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:106792800-106794200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:106793000-106793800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:106793000-106794000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:106793000-106794000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:106793000-106794000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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