Variant report

Variant	rs2553462
Chromosome Location	chr4:106731019-106731020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106727565..106731527-chr4:106732555..106735399,4	K562	blood:
2	chr4:106726516..106728538-chr4:106730107..106732078,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10516523	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11722731	0.92[ASN][1000 genomes]
rs11933386	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11933466	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11934139	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11941690	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12639750	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1294670	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1294673	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13120110	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13148869	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17036098	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17262764	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080789	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544395	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544398	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2544404	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2544405	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2544412	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2544413	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2544421	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2544423	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553432	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553436	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2553438	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553441	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2553445	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2553449	0.98[ASN][1000 genomes]
rs2553458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553468	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28628106	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756260	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4699196	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6533218	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6533221	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6820200	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7684839	0.89[ASN][1000 genomes]
rs7685231	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106724200-106736400	Weak transcription	Ovary	ovary
4	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:106730000-106732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:106730200-106764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:106730400-106732200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:106730400-106732400	Weak transcription	HMEC	breast
9	chr4:106730400-106738800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:106730400-106756400	Weak transcription	Fetal Stomach	stomach
11	chr4:106730400-106757600	Weak transcription	Psoas Muscle	Psoas
12	chr4:106730800-106731400	Weak transcription	Fetal Lung	lung
13	chr4:106730800-106736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:106730800-106761800	Weak transcription	HSMM	muscle

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