Variant report

Variant	rs2553445
Chromosome Location	chr8:58612302-58612303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516523	0.82[AFR][1000 genomes]
rs11933386	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11933466	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13120110	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17262764	0.82[AFR][1000 genomes]
rs2080789	0.98[AFR][1000 genomes]
rs2544395	0.98[AFR][1000 genomes]
rs2544398	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2544404	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2544405	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2544412	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2544413	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2544421	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2544423	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2553432	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2553436	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2553438	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2553441	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2553458	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2553462	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2553468	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3756260	0.80[AFR][1000 genomes]
rs6533218	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6533221	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58602000-58616200	Weak transcription	Aorta	Aorta
2	chr8:58608400-58614200	Weak transcription	Pancreas	Pancrea

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