Variant report

Variant	rs2553438
Chromosome Location	chr4:106794089-106794090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106779895..106782052-chr4:106793000..106795244,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10516523	0.80[EUR][1000 genomes]
rs11933386	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11933393	0.96[ASN][1000 genomes]
rs11933466	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11934139	0.84[EUR][1000 genomes]
rs11941690	0.80[EUR][1000 genomes]
rs1294670	0.84[EUR][1000 genomes]
rs1294673	0.83[EUR][1000 genomes]
rs13120110	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13148869	0.84[EUR][1000 genomes]
rs2080789	0.88[EUR][1000 genomes]
rs2544395	0.88[EUR][1000 genomes]
rs2544398	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2544400	0.95[ASN][1000 genomes]
rs2544404	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2544405	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2544406	0.95[ASN][1000 genomes]
rs2544408	0.95[ASN][1000 genomes]
rs2544409	0.93[ASN][1000 genomes]
rs2544410	0.95[ASN][1000 genomes]
rs2544412	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2544413	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544423	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2544425	0.95[ASN][1000 genomes]
rs2553432	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2553434	0.95[ASN][1000 genomes]
rs2553436	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2553437	0.88[ASN][1000 genomes]
rs2553440	0.83[ASN][1000 genomes]
rs2553441	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2553445	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2553453	0.93[ASN][1000 genomes]
rs2553454	0.93[ASN][1000 genomes]
rs2553458	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553462	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553468	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553472	0.96[ASN][1000 genomes]
rs28628106	0.80[EUR][1000 genomes]
rs3756260	0.80[EUR][1000 genomes]
rs4699196	0.80[EUR][1000 genomes]
rs6533218	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6533221	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6820200	0.80[EUR][1000 genomes]
rs7690167	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830028	chr4:106769299-106801806	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1797065	chr4:106769322-106799532	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106792200-106815800	Weak transcription	Aorta	Aorta
2	chr4:106792800-106794200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:106794000-106794800	Weak transcription	H9 Cell Line	embryonic stem cell

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