Variant report

Variant	rs13138544
Chromosome Location	chr4:106531758-106531759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10025790	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10032142	0.83[EUR][1000 genomes]
rs10032283	0.82[EUR][1000 genomes]
rs10034172	0.82[EUR][1000 genomes]
rs10516520	0.85[CEU][hapmap]
rs10516523	0.85[CHD][hapmap]
rs11097895	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11722731	0.85[CHD][hapmap]
rs11934139	0.85[CHD][hapmap]
rs11941690	0.85[CHD][hapmap]
rs13148869	0.84[CHD][hapmap]
rs1447093	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1447094	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1447097	0.85[CEU][hapmap]
rs1447098	0.83[EUR][1000 genomes]
rs1447099	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1447100	0.83[EUR][1000 genomes]
rs1447101	0.83[EUR][1000 genomes]
rs17036041	0.83[EUR][1000 genomes]
rs17036049	0.83[EUR][1000 genomes]
rs17036098	0.87[CEU][hapmap]
rs17262764	0.85[CHD][hapmap]
rs2044536	0.93[CEU][hapmap];0.89[CHD][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2121558	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2544395	0.83[CHD][hapmap]
rs2553449	0.85[CHD][hapmap]
rs2553468	0.80[CHD][hapmap]
rs28415919	0.83[EUR][1000 genomes]
rs3822277	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4484305	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4699196	0.85[CHD][hapmap]
rs67822595	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7685231	0.85[CHD][hapmap]
rs7699846	0.81[EUR][1000 genomes]
rs921113	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs961472	0.81[CEU][hapmap]
rs9999133	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
5	chr4:106524600-106540400	Weak transcription	Pancreas	Pancrea
6	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
7	chr4:106527200-106534400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
9	chr4:106527400-106542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:106530400-106531800	Weak transcription	Fetal Kidney	kidney
11	chr4:106531400-106532200	Enhancers	Stomach Mucosa	stomach
12	chr4:106531400-106534400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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