Variant report

Variant	rs7699846
Chromosome Location	chr4:106558893-106558894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106557959..106560192-chr4:106563157..106566031,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10025790	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10032142	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10032283	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10034172	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097895	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726715	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13138544	0.81[EUR][1000 genomes]
rs13147012	0.83[EUR][1000 genomes]
rs1447093	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447094	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447098	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447099	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447100	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447101	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036041	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036049	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2044536	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2121558	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28415919	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3822277	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4484305	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67822595	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7680134	0.84[EUR][1000 genomes]
rs7686722	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs921113	0.83[EUR][1000 genomes]
rs9999133	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9999326	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
3	chr4:106550600-106559400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:106553200-106559000	Weak transcription	Fetal Kidney	kidney
5	chr4:106558200-106559400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106558200-106559400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:106558200-106559400	Enhancers	Fetal Brain Male	brain
8	chr4:106558400-106559000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:106558400-106559000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr4:106558400-106559200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:106558400-106559400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:106558400-106559400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:106558400-106559400	Enhancers	Fetal Heart	heart
14	chr4:106558400-106559400	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:106558400-106559400	Enhancers	Small Intestine	intestine
16	chr4:106558400-106559400	Enhancers	NHEK	skin
17	chr4:106558400-106559600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:106558400-106559800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:106558600-106559000	Active TSS	Brain Substantia Nigra	brain
20	chr4:106558600-106559000	Enhancers	NH-A	brain
21	chr4:106558600-106559200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:106558600-106559200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr4:106558600-106559200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr4:106558600-106559200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:106558600-106559200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:106558600-106559200	Enhancers	Aorta	Aorta
27	chr4:106558600-106559200	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr4:106558600-106559200	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr4:106558600-106559200	Enhancers	Colon Smooth Muscle	Colon
30	chr4:106558600-106559200	Enhancers	Fetal Muscle Leg	muscle
31	chr4:106558600-106559200	Enhancers	Fetal Stomach	stomach
32	chr4:106558600-106559200	Enhancers	Gastric	stomach
33	chr4:106558600-106559200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr4:106558600-106559200	Enhancers	Stomach Mucosa	stomach
35	chr4:106558600-106559200	Flanking Active TSS	GM12878-XiMat	blood
36	chr4:106558600-106559200	Enhancers	HSMM	muscle
37	chr4:106558600-106559200	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr4:106558600-106559400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:106558600-106559400	Enhancers	Primary B cells from peripheral blood	blood
40	chr4:106558600-106559400	Enhancers	Primary hematopoietic stem cells	blood
41	chr4:106558600-106559400	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr4:106558600-106559400	Enhancers	Duodenum Mucosa	Duodenum
43	chr4:106558600-106559400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr4:106558600-106559400	Enhancers	Fetal Intestine Large	intestine
45	chr4:106558600-106559400	Flanking Active TSS	Fetal Lung	lung
46	chr4:106558600-106559400	Enhancers	Left Ventricle	heart
47	chr4:106558600-106559400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr4:106558600-106559400	Enhancers	HMEC	breast
49	chr4:106558600-106559800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:106558800-106559200	Enhancers	HUES48 Cell Line	embryonic stem cell

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