Variant report

Variant	rs1447094
Chromosome Location	chr4:106549747-106549748
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10023798	0.87[CEU][hapmap]
rs10025790	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10032142	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10032283	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10034172	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10516520	0.81[CEU][hapmap]
rs11097895	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726715	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13138544	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1447093	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447097	0.81[CEU][hapmap]
rs1447098	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447099	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447100	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447101	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036041	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036049	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036098	0.81[CEU][hapmap]
rs2044536	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2112047	0.81[CEU][hapmap]
rs2121558	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2193856	0.85[CEU][hapmap]
rs2544402	0.85[CEU][hapmap]
rs2553446	0.85[CEU][hapmap]
rs2553460	0.85[CEU][hapmap]
rs2553461	0.85[CEU][hapmap]
rs2553463	0.85[CEU][hapmap]
rs28415919	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796920	0.87[CEU][hapmap]
rs3822277	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4484305	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67822595	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6833345	0.93[CEU][hapmap]
rs7686722	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7699846	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs921113	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9999133	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9999326	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:106540600-106553800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106542600-106551800	Weak transcription	HMEC	breast
6	chr4:106545200-106577800	Weak transcription	Pancreas	Pancrea
7	chr4:106545800-106552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:106545800-106558600	Weak transcription	Left Ventricle	heart
9	chr4:106546000-106552400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:106546000-106553800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:106546000-106555800	Weak transcription	Fetal Lung	lung
12	chr4:106546000-106558200	Weak transcription	Brain Substantia Nigra	brain
13	chr4:106546200-106551600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:106546200-106552000	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:106546200-106554000	Weak transcription	Small Intestine	intestine
16	chr4:106546800-106550600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:106546800-106551800	Weak transcription	Fetal Heart	heart
18	chr4:106547000-106553800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:106549200-106550000	Enhancers	Fetal Brain Male	brain
20	chr4:106549400-106549800	Enhancers	Stomach Mucosa	stomach
21	chr4:106549400-106555200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:106549600-106555600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:106549600-106558600	Weak transcription	Gastric	stomach

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