Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:106528980..106531349-chr4:106533515..106535304,3	K562	blood:
2	chr4:106507027..106509157-chr4:106533544..106535795,2	MCF-7	breast:
3	chr4:106492214..106494083-chr4:106533878..106536037,2	MCF-7	breast:
4	chr4:106515533..106517102-chr4:106533023..106534731,2	MCF-7	breast:
5	chr4:106533642..106537061-chr4:106540249..106545548,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10025790	0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10032142	0.83[EUR][1000 genomes]
rs10032283	0.82[EUR][1000 genomes]
rs10034172	0.82[EUR][1000 genomes]
rs10516523	0.82[JPT][hapmap]
rs11097895	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13138544	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1447093	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1447094	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1447098	0.83[EUR][1000 genomes]
rs1447099	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1447100	0.83[EUR][1000 genomes]
rs1447101	0.83[EUR][1000 genomes]
rs17036041	0.83[EUR][1000 genomes]
rs17036049	0.83[EUR][1000 genomes]
rs2044536	0.89[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2121558	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553449	0.82[JPT][hapmap]
rs28415919	0.83[EUR][1000 genomes]
rs3822277	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4484305	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67822595	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7699846	0.83[EUR][1000 genomes]
rs9999133	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106516000-106553000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106516400-106545600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106521800-106545600	Weak transcription	Right Atrium	heart
5	chr4:106524600-106540400	Weak transcription	Pancreas	Pancrea
6	chr4:106525400-106558600	Weak transcription	Fetal Intestine Large	intestine
7	chr4:106527200-106534400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:106527200-106559000	Weak transcription	Fetal Intestine Small	intestine
9	chr4:106527400-106542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:106531400-106534400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:106532200-106534200	Weak transcription	Stomach Mucosa	stomach

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