Variant report

Variant	rs12947579
Chromosome Location	chr17:63450978-63450979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12601753	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4482329	0.96[EUR][1000 genomes]
rs4563070	0.89[EUR][1000 genomes]
rs4791188	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7224031	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8069284	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8069448	0.83[EUR][1000 genomes]
rs9908987	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9909376	0.84[EUR][1000 genomes]
rs9909481	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9910104	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056195	chr17:63439524-63512389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63449000-63455000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:63450200-63452200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:63450200-63452600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr17:63450200-63456000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr17:63450400-63451600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr17:63450400-63451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr17:63450400-63452000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr17:63450400-63452200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr17:63450400-63452400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr17:63450400-63452400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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