Variant report

Variant	rs12955249
Chromosome Location	chr18:45546445-45546446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12954597	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12967850	0.86[ASN][1000 genomes]
rs4300413	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6507796	0.87[ASN][1000 genomes]
rs9956689	0.81[ASN][1000 genomes]
rs9965294	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45535200-45549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:45539800-45547400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:45539800-45547800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr18:45540000-45548800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:45540400-45547600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:45544200-45548800	Enhancers	Hela-S3	cervix
7	chr18:45544800-45548600	Enhancers	Fetal Thymus	thymus
8	chr18:45545000-45547600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr18:45545000-45547800	Weak transcription	Adipose Nuclei	Adipose
10	chr18:45545000-45547800	Weak transcription	Spleen	Spleen
11	chr18:45545200-45546800	Enhancers	Thymus	Thymus
12	chr18:45545400-45547000	Enhancers	A549	lung
13	chr18:45546000-45547200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr18:45546000-45547600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr18:45546200-45549000	Weak transcription	Placenta	Placenta
16	chr18:45546200-45549200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr18:45546200-45549600	Weak transcription	Esophagus	oesophagus
18	chr18:45546400-45546600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr18:45546400-45548600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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