Variant report

Variant	rs9965294
Chromosome Location	chr18:45536694-45536695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11659453	0.94[ASN][1000 genomes]
rs12954597	0.89[ASN][1000 genomes]
rs12955249	0.85[ASN][1000 genomes]
rs12967850	0.95[ASN][1000 genomes]
rs6507796	0.98[ASN][1000 genomes]
rs7236709	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs9956689	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45535200-45549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:45535400-45537200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:45535400-45539600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:45535600-45538600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:45535800-45537200	Weak transcription	Thymus	Thymus
6	chr18:45535800-45537800	Weak transcription	Hela-S3	cervix
7	chr18:45535800-45538600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr18:45535800-45539800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr18:45535800-45544000	Weak transcription	A549	lung
10	chr18:45536000-45537200	Weak transcription	Fetal Thymus	thymus
11	chr18:45536200-45537200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:45536200-45537600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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