Variant report

Variant	rs12956610
Chromosome Location	chr18:11947525-11947526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:11908313..11910629-chr18:11947415..11948984,2	K562	blood:
2	chr18:11908313..11910422-chr18:11947484..11949382,3	K562	blood:
3	chr18:11942200..11944403-chr18:11945957..11947615,2	K562	blood:
4	chr18:11945871..11949775-chr18:11972448..11976477,3	K562	blood:
5	chr18:11944456..11952400-chr18:11978684..11982486,15	K562	blood:
6	chr18:11938000..11939656-chr18:11946087..11948724,2	K562	blood:
7	chr18:11945775..11953098-chr18:11977697..11982837,16	K562	blood:
8	chr18:11927997..11930119-chr18:11947025..11949213,2	K562	blood:
9	chr18:11946068..11950381-chr18:11979395..11982010,5	MCF-7	breast:
10	chr18:11947089..11947879-chr19:797034..797866,2	Hela-S3	cervix:
11	chr18:11947304..11948125-chr18:11981391..11982015,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000154889	Chromatin interaction
ENSG00000141401	Chromatin interaction
ENSG00000011304	Chromatin interaction
ENSG00000267661	Chromatin interaction
ENSG00000273141	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11660196	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11660354	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11661869	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17519488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677254	0.84[YRI][hapmap]
rs677359	0.85[YRI][hapmap]
rs71350474	0.90[EUR][1000 genomes]
rs71350475	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71350479	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9960951	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv2758470	chr18:11897023-12076102	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	esv2758713	chr18:11897023-12076102	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv909384	chr18:11907374-12101109	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	nsv1063339	chr18:11909588-11979264	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv576495	chr18:11917410-11986557	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv909385	chr18:11938102-11986557	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
10	nsv909386	chr18:11938102-12095950	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11943800-11947600	Weak transcription	Gastric	stomach
2	chr18:11946000-11947800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:11946200-11947600	Enhancers	Stomach Mucosa	stomach
4	chr18:11946200-11948400	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr18:11946600-11948000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:11946600-11948000	Enhancers	HMEC	breast
7	chr18:11946600-11948200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr18:11946600-11948200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr18:11946600-11948200	Flanking Active TSS	Osteobl	bone
10	chr18:11946600-11948400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr18:11946800-11947800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr18:11946800-11947800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr18:11946800-11947800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr18:11946800-11947800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr18:11946800-11947800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
16	chr18:11946800-11947800	Flanking Active TSS	HSMMtube	muscle
17	chr18:11946800-11947800	Flanking Active TSS	NH-A	brain
18	chr18:11946800-11948000	Active TSS	Brain Angular Gyrus	brain
19	chr18:11946800-11948000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr18:11946800-11948000	Active TSS	Psoas Muscle	Psoas
21	chr18:11946800-11948200	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr18:11946800-11948200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr18:11946800-11948200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr18:11946800-11948200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr18:11946800-11948200	Active TSS	Ovary	ovary
26	chr18:11946800-11948400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr18:11946800-11948400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr18:11947000-11947600	Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr18:11947000-11947600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr18:11947000-11947600	Active TSS	Fetal Lung	lung
31	chr18:11947000-11947600	Active TSS	GM12878-XiMat	blood
32	chr18:11947000-11947600	Active TSS	HSMM	muscle
33	chr18:11947000-11947800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr18:11947000-11947800	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr18:11947000-11947800	Active TSS	Monocytes-CD14+_RO01746	blood
36	chr18:11947000-11947800	Active TSS	NHDF-Ad	bronchial
37	chr18:11947000-11948000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr18:11947000-11948000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr18:11947000-11948000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr18:11947000-11948000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr18:11947000-11948000	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr18:11947000-11948000	Active TSS	Fetal Thymus	thymus
43	chr18:11947000-11948000	Active TSS	Rectal Smooth Muscle	rectum
44	chr18:11947000-11948000	Active TSS	Right Atrium	heart
45	chr18:11947000-11948000	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr18:11947000-11948000	Active TSS	A549	lung
47	chr18:11947000-11948000	Active TSS	NHLF	lung
48	chr18:11947000-11948200	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr18:11947000-11948200	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr18:11947000-11948200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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