Variant report

Variant	rs12959896
Chromosome Location	chr18:14937620-14937621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12964743	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12968377	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12969097	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1829374	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878802	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1976777	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28481769	0.86[EUR][1000 genomes]
rs28524777	0.86[EUR][1000 genomes]
rs3877190	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3889355	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4243282	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890740	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4890741	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56752121	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7230084	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7233093	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7237724	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8093953	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9946841	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9947258	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9950732	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv576542	chr18:14913292-14978677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv33381	chr18:14929347-15052868	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv961035	chr18:14935356-14984974	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14933200-14937800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr18:14934600-14940000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:14936400-14941600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr18:14937200-14941200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr18:14937200-14941600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr18:14937200-14941800	Weak transcription	Colonic Mucosa	Colon

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