Variant report

Variant	rs3889355
Chromosome Location	chr18:14996490-14996491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12959896	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12964743	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12968377	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12969097	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1829374	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1878802	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1976777	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28481769	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28524777	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3877190	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4243282	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4890740	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4890741	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56752121	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7230084	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7233093	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7237724	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8093953	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9946841	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9947258	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9950732	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv33381	chr18:14929347-15052868	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv576543	chr18:14949001-15178340	Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2761993	chr18:14956916-15402408	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14993000-14997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links