Variant report

Variant	rs12966105
Chromosome Location	chr18:13535831-13535832
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13423652..13426163-chr18:13534292..13536970,2	MCF-7	breast:
2	chr18:13534001..13536749-chr18:13624726..13626443,2	MCF-7	breast:
3	chr18:13527545..13530214-chr18:13534256..13537841,3	MCF-7	breast:
4	chr18:13531816..13534302-chr18:13534344..13536542,2	MCF-7	breast:
5	chr18:13213063..13222276-chr18:13535546..13547582,47	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267239	Chromatin interaction
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17610923	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13499600-13539200	Weak transcription	Gastric	stomach
3	chr18:13505000-13536000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr18:13507000-13536400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr18:13513200-13538200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr18:13517600-13539000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr18:13517600-13539200	Weak transcription	Aorta	Aorta
8	chr18:13521600-13539200	Weak transcription	Colonic Mucosa	Colon
9	chr18:13524000-13536400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr18:13524000-13548400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr18:13525800-13540400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr18:13525800-13547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:13527000-13538800	Weak transcription	Fetal Brain Female	brain
14	chr18:13527400-13538800	Weak transcription	Brain Germinal Matrix	brain
15	chr18:13527600-13539200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr18:13527800-13538800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr18:13528000-13538600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr18:13528200-13537200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr18:13529400-13539800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr18:13529400-13545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr18:13530800-13536400	Weak transcription	Primary B cells from cord blood	blood
22	chr18:13530800-13538600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr18:13530800-13538600	Weak transcription	Right Ventricle	heart
24	chr18:13530800-13538800	Weak transcription	Colon Smooth Muscle	Colon
25	chr18:13531200-13536400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr18:13531200-13536600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr18:13531200-13537000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr18:13531200-13537400	Weak transcription	Left Ventricle	heart
29	chr18:13531200-13538800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:13531200-13545800	Weak transcription	Psoas Muscle	Psoas
31	chr18:13531400-13536400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr18:13531400-13539200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr18:13533000-13538800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr18:13533000-13539000	Weak transcription	Brain Hippocampus Middle	brain
35	chr18:13533200-13536200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr18:13533200-13536400	Weak transcription	Brain Substantia Nigra	brain
37	chr18:13533400-13537200	Weak transcription	Brain Anterior Caudate	brain
38	chr18:13533600-13536600	Weak transcription	Brain Angular Gyrus	brain
39	chr18:13534000-13541200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr18:13534200-13537200	Weak transcription	Fetal Thymus	thymus
41	chr18:13534200-13537200	Weak transcription	Thymus	Thymus
42	chr18:13534400-13537400	Enhancers	Liver	Liver
43	chr18:13534800-13536000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr18:13535000-13536000	Weak transcription	Primary T cells from cord blood	blood
45	chr18:13535000-13536200	Weak transcription	HepG2	liver
46	chr18:13535000-13537200	Weak transcription	Dnd41	blood
47	chr18:13535000-13539200	Weak transcription	Fetal Brain Male	brain
48	chr18:13535200-13537200	Weak transcription	Small Intestine	intestine
49	chr18:13535200-13538800	Weak transcription	Fetal Heart	heart
50	chr18:13535800-13538600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links