Variant report

Variant	rs17610923
Chromosome Location	chr18:13502469-13502470
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13501771..13505079-chr18:13539153..13541941,3	MCF-7	breast:
2	chr18:13441372..13443737-chr18:13501691..13504430,2	MCF-7	breast:
3	chr18:13217819..13219889-chr18:13500285..13503247,2	MCF-7	breast:
4	chr18:13424332..13425932-chr18:13501772..13503738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11661363	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12606866	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12966105	1.00[CHB][hapmap]
rs17681051	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55696103	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55787036	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830108	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229066	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880635	1.00[ASN][1000 genomes]
rs72880646	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8092260	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13483800-13502600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr18:13498800-13503600	Weak transcription	Colonic Mucosa	Colon
4	chr18:13499200-13505800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr18:13499400-13505400	Genic enhancers	Fetal Thymus	thymus
6	chr18:13499400-13506000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr18:13499600-13503400	Enhancers	Liver	Liver
8	chr18:13499600-13503400	Enhancers	Left Ventricle	heart
9	chr18:13499600-13503800	Enhancers	Fetal Brain Male	brain
10	chr18:13499600-13506000	Weak transcription	Primary B cells from cord blood	blood
11	chr18:13499600-13539200	Weak transcription	Gastric	stomach
12	chr18:13499800-13503400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr18:13499800-13514200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr18:13499800-13531000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr18:13500000-13516800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr18:13500400-13502600	Enhancers	Thymus	Thymus
17	chr18:13500400-13517400	Weak transcription	Spleen	Spleen
18	chr18:13500600-13502600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr18:13500600-13503200	Enhancers	Fetal Lung	lung
20	chr18:13500800-13502600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr18:13500800-13503000	Enhancers	Adipose Nuclei	Adipose
22	chr18:13500800-13503000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr18:13500800-13505000	Enhancers	Fetal Muscle Leg	muscle
24	chr18:13500800-13505000	Enhancers	Psoas Muscle	Psoas
25	chr18:13500800-13505200	Enhancers	Fetal Heart	heart
26	chr18:13501000-13503000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr18:13501000-13503400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr18:13501200-13502600	Weak transcription	Right Ventricle	heart
29	chr18:13501400-13502600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
30	chr18:13501400-13503000	Enhancers	Primary T cells fromperipheralblood	blood
31	chr18:13501400-13503000	Enhancers	NHEK	skin
32	chr18:13501400-13503400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr18:13501400-13503400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr18:13501400-13503600	Enhancers	Primary B cells from peripheral blood	blood
35	chr18:13501400-13505600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr18:13501400-13505800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr18:13501400-13518200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr18:13501600-13502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr18:13501600-13502600	Weak transcription	Right Atrium	heart
40	chr18:13501600-13503000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr18:13501600-13503000	Enhancers	Stomach Smooth Muscle	stomach
42	chr18:13501600-13503200	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr18:13501600-13503200	Enhancers	HSMMtube	muscle
44	chr18:13501600-13503400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr18:13501600-13503400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr18:13501600-13503400	Enhancers	Brain Substantia Nigra	brain
47	chr18:13501600-13504200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr18:13501600-13504800	Strong transcription	Dnd41	blood
49	chr18:13501600-13505800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr18:13501600-13505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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