Variant report

Variant	rs72880646
Chromosome Location	chr18:13497836-13497837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13496619..13499164-chr18:13500210..13502815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267366	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11661363	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12606866	0.84[AFR][1000 genomes]
rs17610923	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17681051	1.00[ASN][1000 genomes]
rs55696103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737069	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55787036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505817	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229066	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880635	1.00[ASN][1000 genomes]
rs8092260	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13467000-13501000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr18:13467400-13502200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr18:13470800-13501800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr18:13471000-13500400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:13473200-13498200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr18:13475200-13498000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:13481200-13498400	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:13482800-13498400	Strong transcription	Dnd41	blood
10	chr18:13483800-13502600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr18:13484600-13498200	Weak transcription	Fetal Intestine Large	intestine
12	chr18:13487000-13500800	Weak transcription	Colon Smooth Muscle	Colon
13	chr18:13487400-13498200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr18:13487600-13498200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr18:13488600-13498400	Strong transcription	Thymus	Thymus
16	chr18:13488800-13499800	Weak transcription	Psoas Muscle	Psoas
17	chr18:13489000-13498200	Weak transcription	Pancreas	Pancrea
18	chr18:13489800-13498400	Weak transcription	Brain Angular Gyrus	brain
19	chr18:13491200-13498800	Weak transcription	HepG2	liver
20	chr18:13491600-13498200	Weak transcription	Fetal Intestine Small	intestine
21	chr18:13492000-13502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr18:13492200-13498400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr18:13493600-13499400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr18:13493800-13498200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr18:13494000-13498200	Weak transcription	Primary B cells from cord blood	blood
26	chr18:13495200-13502000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr18:13495400-13498200	Weak transcription	Colonic Mucosa	Colon
28	chr18:13495400-13500400	Weak transcription	Aorta	Aorta
29	chr18:13495600-13498200	Weak transcription	Brain Hippocampus Middle	brain
30	chr18:13495600-13498200	Weak transcription	Fetal Brain Male	brain
31	chr18:13495800-13498200	Weak transcription	Fetal Kidney	kidney
32	chr18:13495800-13499800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr18:13496000-13498200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr18:13496400-13498600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr18:13496600-13498000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr18:13496800-13499800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr18:13496800-13500200	Strong transcription	Primary T cells from cord blood	blood
38	chr18:13496800-13500200	Weak transcription	HUVEC	blood vessel
39	chr18:13497000-13498000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr18:13497000-13498400	Weak transcription	Brain Germinal Matrix	brain
41	chr18:13497000-13498800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr18:13497000-13499400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr18:13497000-13499600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
44	chr18:13497000-13500200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr18:13497200-13499400	ZNF genes & repeats	Fetal Thymus	thymus
46	chr18:13497400-13498200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr18:13497400-13499200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr18:13497600-13498200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr18:13497600-13498400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr18:13497600-13498400	Strong transcription	Fetal Brain Female	brain

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