Variant report

Variant	rs55787036
Chromosome Location	chr18:13499519-13499520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13494171..13497555-chr18:13498972..13501246,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11661363	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12606866	0.84[AFR][1000 genomes]
rs1648601	0.80[EUR][1000 genomes]
rs17610923	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17681051	1.00[ASN][1000 genomes]
rs55696103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55737069	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6505817	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229066	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880635	1.00[ASN][1000 genomes]
rs72880646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8092260	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13467000-13501000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr18:13467400-13502200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr18:13470800-13501800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr18:13471000-13500400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr18:13483800-13502600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr18:13487000-13500800	Weak transcription	Colon Smooth Muscle	Colon
8	chr18:13488800-13499800	Weak transcription	Psoas Muscle	Psoas
9	chr18:13492000-13502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr18:13495200-13502000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr18:13495400-13500400	Weak transcription	Aorta	Aorta
12	chr18:13495800-13499800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr18:13496800-13499800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr18:13496800-13500200	Strong transcription	Primary T cells from cord blood	blood
15	chr18:13496800-13500200	Weak transcription	HUVEC	blood vessel
16	chr18:13497000-13499600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
17	chr18:13497000-13500200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr18:13497600-13499800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr18:13497600-13499800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr18:13497600-13499800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr18:13497600-13500000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
22	chr18:13497600-13500000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr18:13497800-13499600	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr18:13497800-13499600	Strong transcription	Liver	Liver
25	chr18:13497800-13499600	ZNF genes & repeats	Gastric	stomach
26	chr18:13497800-13499800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr18:13497800-13499800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr18:13497800-13499800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
29	chr18:13497800-13500000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr18:13497800-13500200	Strong transcription	Rectal Smooth Muscle	rectum
31	chr18:13498000-13500000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
32	chr18:13498000-13500000	ZNF genes & repeats	Placenta	Placenta
33	chr18:13498000-13500000	ZNF genes & repeats	Fetal Stomach	stomach
34	chr18:13498000-13500200	Strong transcription	Primary hematopoietic stem cells	blood
35	chr18:13498200-13499600	ZNF genes & repeats	Primary B cells from cord blood	blood
36	chr18:13498200-13499600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr18:13498200-13499600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr18:13498200-13499600	ZNF genes & repeats	Pancreas	Pancrea
39	chr18:13498200-13499800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr18:13498400-13499600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr18:13498400-13499600	Strong transcription	Brain Angular Gyrus	brain
42	chr18:13498400-13499600	ZNF genes & repeats	Fetal Brain Female	brain
43	chr18:13498400-13499600	ZNF genes & repeats	Spleen	Spleen
44	chr18:13498400-13499800	ZNF genes & repeats	Brain Germinal Matrix	brain
45	chr18:13498400-13500000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:13498400-13501600	Genic enhancers	Dnd41	blood
47	chr18:13498600-13500000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr18:13498800-13499600	Weak transcription	Fetal Kidney	kidney
49	chr18:13498800-13499600	ZNF genes & repeats	Lung	lung
50	chr18:13498800-13499600	Strong transcription	HepG2	liver

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