Variant report

Variant	rs72880635
Chromosome Location	chr18:13491823-13491824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11661363	1.00[ASN][1000 genomes]
rs17610923	1.00[ASN][1000 genomes]
rs17681051	1.00[ASN][1000 genomes]
rs55696103	1.00[ASN][1000 genomes]
rs55737069	1.00[ASN][1000 genomes]
rs55787036	1.00[ASN][1000 genomes]
rs55830108	1.00[ASN][1000 genomes]
rs6505817	1.00[ASN][1000 genomes]
rs7229066	1.00[ASN][1000 genomes]
rs72880646	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv909411	chr18:13425604-13493554	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13453000-13494800	Weak transcription	Aorta	Aorta
2	chr18:13456600-13497800	Weak transcription	Gastric	stomach
3	chr18:13467000-13501000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr18:13467400-13502200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr18:13470800-13501800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr18:13471000-13500400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr18:13472600-13497800	Weak transcription	Adipose Nuclei	Adipose
9	chr18:13472600-13497800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr18:13472600-13497800	Weak transcription	Lung	lung
11	chr18:13472800-13497600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr18:13473200-13498200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:13475200-13498000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr18:13478400-13497800	Weak transcription	Left Ventricle	heart
15	chr18:13481200-13498400	Weak transcription	Fetal Muscle Leg	muscle
16	chr18:13481800-13494200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr18:13482200-13497800	Weak transcription	Esophagus	oesophagus
18	chr18:13482800-13493400	Weak transcription	Brain Germinal Matrix	brain
19	chr18:13482800-13494800	Weak transcription	Brain Anterior Caudate	brain
20	chr18:13482800-13498400	Strong transcription	Dnd41	blood
21	chr18:13483600-13492600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr18:13483800-13493000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr18:13483800-13502600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr18:13484600-13498200	Weak transcription	Fetal Intestine Large	intestine
25	chr18:13485000-13494200	Strong transcription	Primary T cells from cord blood	blood
26	chr18:13485600-13497800	Weak transcription	Right Ventricle	heart
27	chr18:13485800-13493200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr18:13486600-13493800	Weak transcription	Placenta	Placenta
29	chr18:13487000-13492200	Strong transcription	Fetal Thymus	thymus
30	chr18:13487000-13497800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr18:13487000-13500800	Weak transcription	Colon Smooth Muscle	Colon
32	chr18:13487400-13492000	Weak transcription	Fetal Lung	lung
33	chr18:13487400-13495200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr18:13487400-13498200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr18:13487600-13494800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr18:13487600-13498200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr18:13487800-13492200	Weak transcription	Liver	Liver
38	chr18:13488200-13492000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr18:13488200-13493200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr18:13488200-13493400	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr18:13488200-13493800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr18:13488200-13496400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr18:13488400-13494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr18:13488600-13492600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr18:13488600-13498400	Strong transcription	Thymus	Thymus
46	chr18:13488800-13493800	Weak transcription	Fetal Brain Male	brain
47	chr18:13488800-13494800	Weak transcription	Fetal Brain Female	brain
48	chr18:13488800-13497800	Weak transcription	Spleen	Spleen
49	chr18:13488800-13499800	Weak transcription	Psoas Muscle	Psoas
50	chr18:13489000-13498200	Weak transcription	Pancreas	Pancrea

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