Variant report

Variant	rs12966403
Chromosome Location	chr18:14792508-14792509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10468701	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10468702	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10775421	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10775422	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11080793	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12326166	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12457328	0.85[EUR][1000 genomes]
rs12606627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12607816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12954471	0.80[JPT][hapmap];0.93[YRI][hapmap]
rs12964673	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12967720	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12970537	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1356570	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1713886	0.80[EUR][1000 genomes]
rs28454867	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35548812	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4113248	0.87[EUR][1000 genomes]
rs55774912	0.82[EUR][1000 genomes]
rs785982	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs785989	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs785993	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9283029	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283030	0.80[ASN][1000 genomes]
rs9284405	0.87[EUR][1000 genomes]
rs9303862	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9303863	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9303864	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9303869	0.90[EUR][1000 genomes]
rs9675365	0.87[EUR][1000 genomes]
rs9675641	0.82[EUR][1000 genomes]
rs9676173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9709715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9748546	0.92[EUR][1000 genomes]
rs9748759	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9989501	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv909433	chr18:14711974-14797570	Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv2216	chr18:14776359-14841989	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	esv1814681	chr18:14783028-14827894	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv978568	chr18:14783133-14793434	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv962462	chr18:14783133-14818256	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1810142	chr18:14784020-14815826	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1810873	chr18:14784085-14827632	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv9618	chr18:14784248-14817724	ZNF genes & repeats Weak transcription Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv961073	chr18:14785627-14792591	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv1808418	chr18:14788052-14826546	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14779400-14796600	Weak transcription	Osteobl	bone

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