Variant report

Variant	rs10468702
Chromosome Location	chr18:14809206-14809207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10468701	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10775421	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10775422	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12326166	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12457328	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12606627	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12607816	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12966403	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12970537	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1622544	0.81[ASN][1000 genomes]
rs1713886	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1970446	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28454867	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3126404	0.80[ASN][1000 genomes]
rs3878726	0.80[ASN][1000 genomes]
rs4113248	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4890750	0.81[EUR][1000 genomes]
rs55721158	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55774912	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55929438	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9283029	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9284405	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9303862	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9303863	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9303864	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9303865	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9303869	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9675365	0.88[AMR][1000 genomes]
rs9675641	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9676173	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9709715	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9748546	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9748759	0.80[EUR][1000 genomes]
rs9797358	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9989501	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv2216	chr18:14776359-14841989	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	esv1814681	chr18:14783028-14827894	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv962462	chr18:14783133-14818256	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1810142	chr18:14784020-14815826	Weak transcription ZNF genes & repeats Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1810873	chr18:14784085-14827632	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv9618	chr18:14784248-14817724	ZNF genes & repeats Weak transcription Enhancers	lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1808418	chr18:14788052-14826546	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv1812410	chr18:14798777-14815324	Enhancers Weak transcription ZNF genes & repeats	lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv19254	chr18:14799518-14815415	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv498876	chr18:14799957-14811249	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv1808686	chr18:14801482-14814604	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3446512	chr18:14802663-14813573	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv3370007	chr18:14803217-14812111	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
18	esv3364244	chr18:14803402-14812900	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv436247	chr18:14803857-14811075	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv3528233	chr18:14803902-14810200	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
21	esv3528234	chr18:14803902-14810200	Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14798200-14817600	Weak transcription	Osteobl	bone
2	chr18:14799000-14817600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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