Variant report

Variant	rs12969760
Chromosome Location	chr18:30311246-30311247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1039142	0.88[EUR][1000 genomes]
rs1039143	0.88[EUR][1000 genomes]
rs10502606	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10502607	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12454261	0.87[EUR][1000 genomes]
rs12454337	0.87[EUR][1000 genomes]
rs12454409	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12456916	0.87[EUR][1000 genomes]
rs12456996	0.81[EUR][1000 genomes]
rs12457924	0.87[EUR][1000 genomes]
rs12457977	0.87[EUR][1000 genomes]
rs12953998	0.88[EUR][1000 genomes]
rs12954299	0.88[EUR][1000 genomes]
rs12956194	0.87[EUR][1000 genomes]
rs12956427	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12956607	0.87[EUR][1000 genomes]
rs12957691	0.87[EUR][1000 genomes]
rs12959986	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12961920	0.88[EUR][1000 genomes]
rs12967142	0.87[EUR][1000 genomes]
rs12967667	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12967862	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12968405	0.80[EUR][1000 genomes]
rs12968480	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12969530	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12969622	0.86[EUR][1000 genomes]
rs12969651	0.86[EUR][1000 genomes]
rs12969727	0.85[EUR][1000 genomes]
rs12969787	0.85[EUR][1000 genomes]
rs12969799	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12970122	0.87[EUR][1000 genomes]
rs12970129	0.86[EUR][1000 genomes]
rs12970723	0.87[EUR][1000 genomes]
rs12970991	0.81[EUR][1000 genomes]
rs12971179	0.87[EUR][1000 genomes]
rs1357535	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1357536	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1357538	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1403760	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1403761	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1403762	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1523579	0.80[EUR][1000 genomes]
rs1523591	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1523592	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17665734	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1851700	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2030622	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2049335	0.87[EUR][1000 genomes]
rs2049336	0.87[EUR][1000 genomes]
rs2132819	0.87[EUR][1000 genomes]
rs2140447	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2140448	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2140449	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2173180	0.87[EUR][1000 genomes]
rs2421641	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4597394	0.80[EUR][1000 genomes]
rs6506980	0.82[EUR][1000 genomes]
rs6506982	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6506983	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6506984	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6506985	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6506986	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs689523	0.85[EUR][1000 genomes]
rs689525	0.85[EUR][1000 genomes]
rs7228647	0.87[EUR][1000 genomes]
rs7228954	0.86[EUR][1000 genomes]
rs7230048	0.87[EUR][1000 genomes]
rs7230052	0.87[EUR][1000 genomes]
rs7230438	0.87[EUR][1000 genomes]
rs7230625	0.87[EUR][1000 genomes]
rs7232695	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7233023	0.88[EUR][1000 genomes]
rs7233463	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7234525	0.81[EUR][1000 genomes]
rs7234772	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7236408	0.84[EUR][1000 genomes]
rs7237843	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7241764	0.84[EUR][1000 genomes]
rs7242010	0.89[EUR][1000 genomes]
rs8083192	0.87[EUR][1000 genomes]
rs8089651	0.81[EUR][1000 genomes]
rs8098984	0.87[EUR][1000 genomes]
rs8099131	0.87[EUR][1000 genomes]
rs8099133	0.87[EUR][1000 genomes]
rs8099299	0.87[EUR][1000 genomes]
rs9945156	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9946368	0.87[EUR][1000 genomes]
rs9946664	0.87[EUR][1000 genomes]
rs9951265	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9951538	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9952882	0.87[EUR][1000 genomes]
rs9953014	0.87[EUR][1000 genomes]
rs9953107	0.87[EUR][1000 genomes]
rs9953121	0.88[EUR][1000 genomes]
rs9953954	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9953972	0.84[EUR][1000 genomes]
rs9953979	0.84[EUR][1000 genomes]
rs9954196	0.84[EUR][1000 genomes]
rs9954483	0.85[EUR][1000 genomes]
rs9954691	0.91[EUR][1000 genomes]
rs9954988	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9954999	0.87[EUR][1000 genomes]
rs9955000	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9955063	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9955106	0.86[EUR][1000 genomes]
rs9957809	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9957814	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9958329	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9962132	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9963102	0.85[EUR][1000 genomes]
rs9963370	0.87[EUR][1000 genomes]
rs9963435	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9965787	0.84[EUR][1000 genomes]
rs9965869	0.87[EUR][1000 genomes]
rs9966576	0.82[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30308800-30311400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr18:30309400-30312400	Weak transcription	HepG2	liver
3	chr18:30309600-30312200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:30310000-30311400	Active TSS	Muscle Satellite Cultured Cells	--
5	chr18:30310000-30311400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr18:30310200-30311400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:30310200-30311400	Active TSS	NHDF-Ad	bronchial
8	chr18:30310400-30311400	Active TSS	Aorta	Aorta
9	chr18:30310400-30311400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr18:30310800-30311400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:30311000-30311400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr18:30311000-30312400	Enhancers	Primary B cells from cord blood	blood
13	chr18:30311000-30322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:30311200-30311400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr18:30311200-30311600	Enhancers	Dnd41	blood
16	chr18:30311200-30312000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr18:30311200-30315400	Weak transcription	NH-A	brain
18	chr18:30311200-30315600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:30311200-30321400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr18:30311200-30322800	Weak transcription	Fetal Kidney	kidney

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