Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11873244	0.87[EUR][1000 genomes]
rs12963789	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1962196	0.85[EUR][1000 genomes]
rs28481830	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34622107	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3923383	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4343347	0.86[EUR][1000 genomes]
rs4386188	0.84[EUR][1000 genomes]
rs4401106	0.85[EUR][1000 genomes]
rs71241520	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7240131	0.85[EUR][1000 genomes]
rs72479183	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7505778	0.82[EUR][1000 genomes]
rs8088992	0.85[EUR][1000 genomes]
rs8090318	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9945059	0.83[EUR][1000 genomes]
rs9950151	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9953936	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9958424	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9962929	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9965835	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24196400-24205400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24199400-24204600	Weak transcription	HepG2	liver
3	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
4	chr6:24201600-24206000	Weak transcription	Fetal Kidney	kidney

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