Variant report
| Variant | rs34622107 |
|---|---|
| Chromosome Location | chr18:12181805-12181806 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11873244 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12963789 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12971215 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1962196 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs28481830 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3923383 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4343347 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4386188 | 0.83[EUR][1000 genomes] |
| rs4401106 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71241520 | 0.81[EUR][1000 genomes] |
| rs7240131 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs72479183 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7505778 | 0.82[EUR][1000 genomes] |
| rs8088992 | 0.85[EUR][1000 genomes] |
| rs8090318 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9945059 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9950151 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9953936 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9958424 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9962929 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9965835 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063125 | chr18:12046892-12918251 | Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 130 gene(s) | inside rSNPs | diseases |
| 2 | nsv1055343 | chr18:12107012-12226356 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv491873 | chr18:12159445-12739784 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 4 | nsv960252 | chr18:12161216-12220798 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:12154200-12183800 | Weak transcription | Pancreas | Pancrea |
