Variant report

Variant	rs1297125
Chromosome Location	chr21:15658830-15658831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15650981..15652853-chr21:15655632..15658875,3	K562	blood:
2	chr21:15647599..15649902-chr21:15656709..15659445,2	K562	blood:
3	chr21:15656047..15658961-chr21:16165584..16168436,2	K562	blood:
4	chr21:15658088..15660152-chr21:15664037..15665784,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1123271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1297126	0.86[EUR][1000 genomes]
rs1297128	0.82[EUR][1000 genomes]
rs17002266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17002643	1.00[JPT][hapmap]
rs17002662	1.00[JPT][hapmap]
rs17240438	1.00[JPT][hapmap]
rs17306192	1.00[JPT][hapmap]
rs2192161	0.90[ASN][1000 genomes]
rs2822525	1.00[CHB][hapmap]
rs2822527	1.00[CHB][hapmap]
rs2822534	1.00[CHB][hapmap]
rs2822535	1.00[CHB][hapmap]
rs2822545	1.00[CHB][hapmap]
rs2822560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2822639	1.00[JPT][hapmap]
rs62227535	0.95[ASN][1000 genomes]
rs62228672	0.90[ASN][1000 genomes]
rs62228673	0.90[ASN][1000 genomes]
rs62228674	0.90[ASN][1000 genomes]
rs62228675	0.90[ASN][1000 genomes]
rs62228676	0.90[ASN][1000 genomes]
rs62228677	0.90[ASN][1000 genomes]
rs62228678	0.90[ASN][1000 genomes]
rs62228679	0.90[ASN][1000 genomes]
rs62228680	0.90[ASN][1000 genomes]
rs62228681	0.90[ASN][1000 genomes]
rs62228682	0.90[ASN][1000 genomes]
rs62228683	0.90[ASN][1000 genomes]
rs62228684	0.90[ASN][1000 genomes]
rs62228685	0.90[ASN][1000 genomes]
rs62228686	0.90[ASN][1000 genomes]
rs62228687	0.90[ASN][1000 genomes]
rs62228727	0.90[ASN][1000 genomes]
rs7281177	0.90[ASN][1000 genomes]
rs909257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs914115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv520538	chr21:15615220-15660539	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1066930	chr21:15626232-15724630	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv459095	chr21:15626660-15698808	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv587044	chr21:15626660-15698808	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv470878	chr21:15630812-15698808	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15654000-15662800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:15654400-15661200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr21:15654800-15661200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr21:15655000-15661800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr21:15657600-15662400	Weak transcription	K562	blood
6	chr21:15658600-15659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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