Variant report

Variant	rs1297388
Chromosome Location	chr18:8087572-8087573
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10468772	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10853359	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11081352	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11081354	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11081355	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11081356	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11081358	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12185338	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12956937	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12959661	0.82[EUR][1000 genomes]
rs1296003	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1296337	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1298292	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1788069	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1942958	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1942959	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1942960	0.81[ASN][1000 genomes]
rs2156236	0.84[EUR][1000 genomes]
rs34398246	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs478396	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs484494	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs486607	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs488952	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs490065	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs491890	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs492841	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs493221	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs499764	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5000485	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs502843	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs503388	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs506248	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs507445	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs511993	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs545910	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs552448	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561488	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs561613	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs567523	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs575538	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs576519	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs583909	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs611022	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs615129	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs616698	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs618104	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs618466	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs619379	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs620346	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs623258	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs629391	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630924	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs631838	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs635157	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs641089	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6417046	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs649598	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6506542	0.82[EUR][1000 genomes]
rs6506545	0.85[EUR][1000 genomes]
rs6506546	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs658110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs674823	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs680016	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs681491	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs693630	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7234055	0.83[EUR][1000 genomes]
rs8082776	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8088126	0.82[EUR][1000 genomes]
rs8088354	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9807298	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9807625	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8052600-8105200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr18:8065600-8101600	Weak transcription	Aorta	Aorta
3	chr18:8066200-8094000	Weak transcription	Hela-S3	cervix
4	chr18:8067400-8110200	Weak transcription	Right Ventricle	heart
5	chr18:8067600-8094800	Weak transcription	NHDF-Ad	bronchial
6	chr18:8068000-8092400	Weak transcription	Thymus	Thymus
7	chr18:8068000-8094800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr18:8068000-8100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr18:8068400-8095200	Weak transcription	Lung	lung
10	chr18:8068400-8101600	Weak transcription	Fetal Stomach	stomach
11	chr18:8068400-8102400	Weak transcription	Fetal Thymus	thymus
12	chr18:8068600-8124800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:8069000-8087600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr18:8069000-8102200	Weak transcription	Fetal Muscle Leg	muscle
15	chr18:8069000-8102400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr18:8069000-8102400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:8069400-8103400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr18:8069600-8088400	Weak transcription	HMEC	breast
19	chr18:8069600-8102400	Weak transcription	Brain Anterior Caudate	brain
20	chr18:8070000-8093200	Weak transcription	Fetal Lung	lung
21	chr18:8070000-8097600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr18:8074200-8102400	Weak transcription	Psoas Muscle	Psoas
23	chr18:8076400-8087600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr18:8079000-8092600	Weak transcription	Ovary	ovary
25	chr18:8080600-8091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:8082200-8092600	Weak transcription	Gastric	stomach
27	chr18:8084400-8102800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr18:8084600-8102600	Weak transcription	NH-A	brain
29	chr18:8084600-8108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr18:8084800-8088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr18:8085000-8088000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr18:8085200-8088600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr18:8085200-8091000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr18:8085200-8093800	Weak transcription	Osteobl	bone
35	chr18:8085200-8096600	Weak transcription	Fetal Heart	heart
36	chr18:8085200-8102800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr18:8085400-8087800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr18:8085400-8088600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:8085400-8101800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr18:8085600-8093400	Weak transcription	HSMM	muscle
41	chr18:8085800-8088600	Weak transcription	Primary T cells from cord blood	blood
42	chr18:8085800-8088800	Strong transcription	A549	lung
43	chr18:8086200-8088400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr18:8086200-8102400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr18:8086400-8088000	Weak transcription	Brain Substantia Nigra	brain
46	chr18:8086400-8088400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr18:8086400-8102400	Weak transcription	Adipose Nuclei	Adipose
48	chr18:8086400-8102600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr18:8086600-8087600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr18:8086600-8087800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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