Variant report

Variant	rs12986451
Chromosome Location	chrX:80455786-80455787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11679836	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1170619	0.85[EUR][1000 genomes]
rs1170621	0.85[EUR][1000 genomes]
rs1184930	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12473278	0.84[EUR][1000 genomes]
rs12473309	0.84[EUR][1000 genomes]
rs4848919	0.85[EUR][1000 genomes]
rs749196	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754822	chrX:80365094-80852865	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:80446200-80456600	Weak transcription	Pancreas	Pancrea
2	chrX:80449200-80456400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chrX:80451400-80456200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chrX:80453800-80456600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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