Variant report
| Variant | rs11679836 |
|---|---|
| Chromosome Location | chr2:125013869-125013870 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10496634 | 0.84[EUR][1000 genomes] |
| rs11682281 | 0.84[EUR][1000 genomes] |
| rs11682449 | 0.84[EUR][1000 genomes] |
| rs11695218 | 0.84[EUR][1000 genomes] |
| rs1170578 | 0.84[AFR][1000 genomes] |
| rs1170619 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1170621 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1184930 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11891838 | 0.84[EUR][1000 genomes] |
| rs11899935 | 0.82[EUR][1000 genomes] |
| rs11902121 | 0.84[EUR][1000 genomes] |
| rs12473278 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12473309 | 0.91[EUR][1000 genomes] |
| rs12986451 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12987836 | 0.84[EUR][1000 genomes] |
| rs1529298 | 0.84[EUR][1000 genomes] |
| rs1529299 | 0.84[EUR][1000 genomes] |
| rs17011004 | 0.81[EUR][1000 genomes] |
| rs17011031 | 0.84[EUR][1000 genomes] |
| rs17011040 | 0.84[EUR][1000 genomes] |
| rs17011058 | 0.84[EUR][1000 genomes] |
| rs35122611 | 0.84[EUR][1000 genomes] |
| rs4848919 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs56321724 | 0.84[EUR][1000 genomes] |
| rs56369586 | 0.84[EUR][1000 genomes] |
| rs57578864 | 0.84[EUR][1000 genomes] |
| rs62163932 | 0.84[EUR][1000 genomes] |
| rs62163933 | 0.84[EUR][1000 genomes] |
| rs62163934 | 0.84[EUR][1000 genomes] |
| rs749196 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7561523 | 0.84[EUR][1000 genomes] |
| rs7584334 | 0.84[EUR][1000 genomes] |
| rs7598484 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:125012800-125014800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr2:125013600-125014400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
