Variant report

Variant	rs1170578
Chromosome Location	chr2:125015102-125015103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10496635	0.80[JPT][hapmap]
rs11123030	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs11679836	0.84[AFR][1000 genomes]
rs1170605	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1170606	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1170610	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1170615	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1170616	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1170617	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1170622	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs1170623	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1170624	1.00[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs1170625	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1170627	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1170628	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1170631	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1186066	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1186396	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2163249	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2565770	0.83[EUR][1000 genomes]
rs2579816	0.82[JPT][hapmap]
rs6541945	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs707498	0.81[EUR][1000 genomes]
rs7560777	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs779976	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs779977	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs779985	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs779994	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs779995	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs779996	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs779997	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780020	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs780023	0.87[CHB][hapmap]
rs780025	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs780026	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs780028	0.83[EUR][1000 genomes]
rs780029	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780030	0.81[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780031	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780032	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780033	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780034	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs780035	0.80[EUR][1000 genomes]
rs780040	0.97[ASN][1000 genomes]
rs780041	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs780042	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780044	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780050	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs780051	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs780052	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs796643	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs796644	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs801923	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs809053	0.98[ASN][1000 genomes]
rs810513	0.81[EUR][1000 genomes]
rs811901	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs891409	0.94[CHB][hapmap]
rs891410	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9646914	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125014400-125016200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:125015000-125015400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:125015000-125016200	Enhancers	NHLF	lung

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