Variant report

Variant	rs891409
Chromosome Location	chr2:124973009-124973010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10496635	0.92[CHD][hapmap];0.84[JPT][hapmap];0.92[TSI][hapmap]
rs11123030	0.90[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs1170578	0.94[CHB][hapmap];0.92[ASN][1000 genomes]
rs1170605	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1170606	0.90[ASW][hapmap];0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap]
rs1170610	0.81[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap]
rs1170615	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1170616	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1170617	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.94[MKK][hapmap];0.92[TSI][hapmap]
rs1170622	0.90[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1170623	0.88[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1170624	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1170625	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1170627	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap]
rs1170628	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap]
rs1170631	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1186396	0.86[CHD][hapmap];0.91[ASN][1000 genomes]
rs1439136	0.91[EUR][1000 genomes]
rs2163249	0.90[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap]
rs2579816	0.91[EUR][1000 genomes]
rs2699362	0.85[EUR][1000 genomes]
rs2699377	0.90[JPT][hapmap]
rs6541945	0.90[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs7560777	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs779976	0.86[CHD][hapmap]
rs779977	0.86[CHD][hapmap]
rs779985	0.85[CHB][hapmap];0.89[CHD][hapmap]
rs779994	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs779995	0.86[CHD][hapmap];0.92[ASN][1000 genomes]
rs779996	0.92[ASN][1000 genomes]
rs779997	0.86[CHD][hapmap];0.90[ASN][1000 genomes]
rs780023	0.84[EUR][1000 genomes]
rs780030	0.83[JPT][hapmap]
rs780040	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs780041	0.92[ASN][1000 genomes]
rs780042	0.93[ASN][1000 genomes]
rs780044	0.93[ASN][1000 genomes]
rs780052	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs801923	0.92[ASN][1000 genomes]
rs809053	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs811901	0.92[ASN][1000 genomes]
rs891410	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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