Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1170578	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1170622	0.94[ASN][1000 genomes]
rs1170623	0.93[ASN][1000 genomes]
rs1170624	0.94[ASN][1000 genomes]
rs1170625	0.94[ASN][1000 genomes]
rs1186396	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2565770	0.83[EUR][1000 genomes]
rs707498	0.80[EUR][1000 genomes]
rs779995	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs779996	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs779997	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs780020	0.80[EUR][1000 genomes]
rs780028	0.83[EUR][1000 genomes]
rs780029	0.83[EUR][1000 genomes]
rs780030	0.83[EUR][1000 genomes]
rs780031	0.83[EUR][1000 genomes]
rs780032	0.83[EUR][1000 genomes]
rs780033	0.83[EUR][1000 genomes]
rs780034	0.81[EUR][1000 genomes]
rs780035	0.81[EUR][1000 genomes]
rs780040	0.99[ASN][1000 genomes]
rs780041	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs780044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801923	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs809053	1.00[ASN][1000 genomes]
rs810513	0.80[EUR][1000 genomes]
rs811901	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9646914	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125005600-125008000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:125006600-125008600	Weak transcription	Gastric	stomach
3	chr2:125007600-125008200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:125007800-125008000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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