Variant report

Variant	rs780034
Chromosome Location	chr2:125030235-125030236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11123030	0.84[JPT][hapmap]
rs1170578	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1170605	0.84[JPT][hapmap]
rs1170606	0.84[JPT][hapmap]
rs1170610	0.84[JPT][hapmap]
rs1170615	0.84[JPT][hapmap]
rs1170616	0.84[JPT][hapmap]
rs1170617	0.84[JPT][hapmap]
rs1170627	0.84[JPT][hapmap]
rs1170628	0.84[JPT][hapmap]
rs1170631	0.84[JPT][hapmap]
rs1186066	0.82[GIH][hapmap];0.85[JPT][hapmap]
rs1186396	0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs2163249	0.84[JPT][hapmap]
rs2565770	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2579816	0.84[JPT][hapmap]
rs2699362	0.94[ASN][1000 genomes]
rs2699363	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6541945	0.84[JPT][hapmap]
rs707498	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7560777	0.84[JPT][hapmap]
rs779976	0.88[GIH][hapmap];0.95[JPT][hapmap]
rs779977	0.87[GIH][hapmap];0.95[JPT][hapmap]
rs779985	0.90[JPT][hapmap]
rs779995	0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs779996	0.81[EUR][1000 genomes]
rs779997	0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs780020	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780023	0.84[CHB][hapmap];0.97[CHD][hapmap];0.94[ASN][1000 genomes]
rs780024	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780025	0.95[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780026	0.84[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs780027	0.93[ASN][1000 genomes]
rs780028	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780029	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780030	0.95[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780031	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780032	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780033	0.88[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs780035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780042	0.81[EUR][1000 genomes]
rs780044	0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs780050	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780051	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs780052	0.89[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs796643	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap]
rs796644	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs810513	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs811901	0.81[EUR][1000 genomes]
rs9308649	0.88[YRI][hapmap]
rs9646914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125025800-125041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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