Variant report

Variant	rs1186066
Chromosome Location	chr2:125024950-125024951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11123030	0.82[CEU][hapmap]
rs1170578	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1170606	0.82[JPT][hapmap]
rs1170622	0.82[JPT][hapmap]
rs1170624	0.82[JPT][hapmap]
rs1170625	0.82[JPT][hapmap]
rs1186396	0.80[CHD][hapmap];0.91[JPT][hapmap]
rs2163249	0.82[CEU][hapmap]
rs2565770	0.82[ASN][1000 genomes]
rs2699362	0.82[ASN][1000 genomes]
rs6541945	0.82[CEU][hapmap]
rs7560777	0.82[CEU][hapmap]
rs779976	0.80[CHD][hapmap];0.91[JPT][hapmap]
rs779977	0.80[CHD][hapmap];0.91[JPT][hapmap]
rs779985	0.95[JPT][hapmap]
rs779994	0.82[JPT][hapmap]
rs779995	0.80[CHD][hapmap];0.95[JPT][hapmap]
rs779997	0.80[CHD][hapmap];0.91[JPT][hapmap]
rs780020	0.81[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap]
rs780025	0.91[JPT][hapmap]
rs780026	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780027	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780028	0.82[ASN][1000 genomes]
rs780029	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs780030	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs780031	0.81[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs780032	0.81[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap]
rs780033	0.81[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs780034	0.82[GIH][hapmap];0.85[JPT][hapmap]
rs780041	0.82[EUR][1000 genomes]
rs780044	0.91[JPT][hapmap]
rs780050	0.81[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap]
rs780051	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780052	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs796643	0.81[CHB][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap]
rs796644	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs891410	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125024000-125025800	Enhancers	Brain Cingulate Gyrus	brain
2	chr2:125024200-125025000	Enhancers	Fetal Lung	lung
3	chr2:125024200-125025600	Enhancers	Fetal Stomach	stomach
4	chr2:125024600-125025800	Enhancers	Adipose Nuclei	Adipose
5	chr2:125024600-125026200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:125024800-125025200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:125024800-125025200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:125024800-125025800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:125024800-125028200	Weak transcription	Fetal Brain Male	brain

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