Variant report

Variant	rs1186396
Chromosome Location	chr2:125014959-125014960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10496635	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs11123030	0.85[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs1170578	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1170605	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1170606	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1170610	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1170615	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1170616	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1170617	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1170622	0.89[CHB][hapmap];0.80[JPT][hapmap];0.92[ASN][1000 genomes]
rs1170623	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs1170624	0.90[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1170625	0.89[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1170627	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1170628	0.90[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap]
rs1170631	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1186066	0.80[CHD][hapmap];0.91[JPT][hapmap]
rs2163249	0.85[CHB][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs2565770	0.83[EUR][1000 genomes]
rs6541945	0.85[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs707498	0.81[EUR][1000 genomes]
rs7560777	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs779976	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs779977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs779985	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap]
rs779994	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs779995	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs779996	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs779997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780020	0.80[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs780023	0.85[JPT][hapmap]
rs780025	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs780026	1.00[JPT][hapmap]
rs780028	0.83[EUR][1000 genomes]
rs780029	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780030	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780031	0.80[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.83[EUR][1000 genomes]
rs780032	0.80[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes]
rs780033	0.80[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes]
rs780034	0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs780035	0.80[EUR][1000 genomes]
rs780040	0.95[ASN][1000 genomes]
rs780041	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs780042	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780044	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780050	0.80[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs780051	0.95[JPT][hapmap]
rs780052	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs796643	0.80[CEU][hapmap];0.85[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs796644	0.80[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs801923	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs809053	0.96[ASN][1000 genomes]
rs810513	0.81[EUR][1000 genomes]
rs811901	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs891409	0.86[CHD][hapmap]
rs891410	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9646914	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125014400-125016200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:125014800-125015000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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