Variant report

Variant	rs780029
Chromosome Location	chr2:125027173-125027174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11123030	0.85[JPT][hapmap]
rs1170578	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1170605	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1170606	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1170610	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1170615	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1170616	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1170617	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1170622	0.83[CHB][hapmap]
rs1170623	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1170624	0.84[CHB][hapmap]
rs1170625	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1170627	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1170628	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1170631	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1186066	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1186396	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2163249	0.85[JPT][hapmap]
rs2565770	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699362	1.00[ASN][1000 genomes]
rs2699363	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6541945	0.85[JPT][hapmap]
rs707498	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7560777	0.86[JPT][hapmap]
rs779976	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs779977	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs779985	0.86[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs779994	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs779995	0.86[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs779996	0.83[EUR][1000 genomes]
rs779997	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs780023	0.94[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs780024	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs780025	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs780026	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs780027	0.99[ASN][1000 genomes]
rs780028	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780030	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs780033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780034	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780035	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs780042	0.83[EUR][1000 genomes]
rs780044	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs780050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs780051	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs780052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs796643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs796644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs801923	0.82[EUR][1000 genomes]
rs810513	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs811901	0.83[EUR][1000 genomes]
rs891410	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs9308649	0.93[YRI][hapmap]
rs9646914	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125024800-125028200	Weak transcription	Fetal Brain Male	brain
2	chr2:125025600-125027200	Enhancers	Right Atrium	heart
3	chr2:125025800-125041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:125027000-125027400	Enhancers	Fetal Heart	heart
5	chr2:125027000-125027400	Enhancers	Left Ventricle	heart

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