Variant report

Variant	rs9308649
Chromosome Location	chr2:125035016-125035017
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2565770	0.94[YRI][hapmap]
rs707498	0.81[AFR][1000 genomes]
rs780025	0.94[YRI][hapmap]
rs780029	0.93[YRI][hapmap]
rs780030	0.94[YRI][hapmap]
rs780031	0.94[YRI][hapmap]
rs780032	0.94[YRI][hapmap]
rs780033	0.94[YRI][hapmap]
rs780034	0.88[YRI][hapmap]
rs780050	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs796644	0.94[YRI][hapmap]
rs9646914	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125025800-125041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:125034400-125035600	Enhancers	Fetal Intestine Large	intestine
3	chr2:125034600-125035400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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