Variant report

Variant	rs780052
Chromosome Location	chr2:125036274-125036275
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10496635	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs11123030	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1170578	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1170605	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1170606	0.88[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1170610	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1170615	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1170616	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1170617	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1170622	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs1170623	0.94[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs1170624	0.94[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs1170625	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs1170627	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1170628	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1170629	0.80[CEU][hapmap]
rs1170631	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1186066	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1186396	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2163249	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2565770	0.92[ASN][1000 genomes]
rs2579816	0.83[CEU][hapmap]
rs2699362	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2699363	0.88[ASN][1000 genomes]
rs6541945	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs707498	1.00[ASN][1000 genomes]
rs7560777	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs779976	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs779977	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs779985	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs779994	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs779995	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs779997	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs780020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs780023	0.93[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780024	0.96[ASN][1000 genomes]
rs780025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs780026	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs780027	0.91[ASN][1000 genomes]
rs780028	0.92[ASN][1000 genomes]
rs780029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs780030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs780031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs780032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs780033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs780034	0.89[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs780035	0.98[ASN][1000 genomes]
rs780040	0.96[EUR][1000 genomes]
rs780044	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs780050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs780051	0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs796643	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs796644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs809053	0.96[EUR][1000 genomes]
rs810513	0.96[ASN][1000 genomes]
rs891409	0.83[CEU][hapmap]
rs891410	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9646914	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125025800-125041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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