Variant report
| Variant | rs1170629 |
|---|---|
| Chromosome Location | chr2:124965458-124965459 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1170578 | 0.92[ASN][1000 genomes] |
| rs1170605 | 0.87[CEU][hapmap] |
| rs1170606 | 0.80[CEU][hapmap] |
| rs1170610 | 0.86[CEU][hapmap] |
| rs1170615 | 0.87[CEU][hapmap] |
| rs1170616 | 0.87[CEU][hapmap] |
| rs1170617 | 0.86[CEU][hapmap] |
| rs1170622 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1170623 | 0.87[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1170624 | 0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1170625 | 0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1170627 | 0.86[CEU][hapmap] |
| rs1170628 | 0.86[CEU][hapmap] |
| rs1170631 | 0.86[CEU][hapmap] |
| rs1186396 | 0.90[ASN][1000 genomes] |
| rs1439136 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2579816 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2699362 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs779994 | 0.87[CEU][hapmap] |
| rs779995 | 0.91[ASN][1000 genomes] |
| rs779996 | 0.91[ASN][1000 genomes] |
| rs779997 | 0.90[ASN][1000 genomes] |
| rs780023 | 0.81[EUR][1000 genomes] |
| rs780040 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs780041 | 0.92[ASN][1000 genomes] |
| rs780042 | 0.92[ASN][1000 genomes] |
| rs780044 | 0.92[ASN][1000 genomes] |
| rs780052 | 0.80[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs801923 | 0.91[ASN][1000 genomes] |
| rs809053 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs811901 | 0.91[ASN][1000 genomes] |
| rs891410 | 0.87[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531408 | chr2:124727329-125011247 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
