Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:124946899..124949400-chr2:124951253..124953326,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10496635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11123030	0.90[JPT][hapmap]
rs1170578	0.82[JPT][hapmap]
rs1170605	0.89[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1170606	0.82[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1170610	0.88[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1170615	0.88[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1170616	0.88[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1170617	0.88[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1170622	0.92[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs1170623	0.88[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs1170624	0.88[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1170625	0.89[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1170627	0.88[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1170628	0.88[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1170631	0.88[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1439136	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2163249	0.90[JPT][hapmap]
rs2699377	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6541945	0.90[JPT][hapmap]
rs7560777	0.91[JPT][hapmap]
rs779994	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs780023	0.87[CEU][hapmap]
rs780030	0.85[JPT][hapmap]
rs780034	0.84[JPT][hapmap]
rs780052	0.83[CEU][hapmap]
rs891410	0.89[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124938600-124954400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search: