Variant report

Variant	rs2699377
Chromosome Location	chr2:124937439-124937440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:124937200..124939006-chr2:124939420..124940926,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10496635	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11123030	0.91[JPT][hapmap]
rs1170605	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1170606	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs1170610	0.82[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1170615	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1170616	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1170617	0.82[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap]
rs1170622	0.92[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs1170623	0.82[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs1170624	0.82[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs1170625	0.83[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs1170627	0.82[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap]
rs1170628	0.82[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap]
rs1170631	0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs1439136	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2163249	0.91[JPT][hapmap]
rs2579816	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6541945	0.91[JPT][hapmap]
rs7560777	0.91[JPT][hapmap]
rs779985	0.81[JPT][hapmap]
rs779994	0.83[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs779995	0.81[JPT][hapmap]
rs780023	0.87[CEU][hapmap]
rs780030	0.85[JPT][hapmap]
rs891409	0.90[JPT][hapmap]
rs891410	0.83[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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