Variant report

Variant	rs56369586
Chromosome Location	chr2:124947854-124947855
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:124946899..124949400-chr2:124951253..124953326,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10496634	0.98[EUR][1000 genomes]
rs11679836	0.84[EUR][1000 genomes]
rs11682281	0.98[EUR][1000 genomes]
rs11682449	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11695218	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1170619	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1170621	0.87[EUR][1000 genomes]
rs1184930	0.88[EUR][1000 genomes]
rs11891838	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11899935	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11902121	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12473278	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12473309	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12987836	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1529298	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1529299	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17011004	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011031	0.98[EUR][1000 genomes]
rs17011040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17011058	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35122611	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4848919	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56321724	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs57578864	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62163932	0.98[EUR][1000 genomes]
rs62163933	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62163934	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs749196	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7561523	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7561939	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7584334	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7598484	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124938600-124954400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links