Variant report

Variant	rs17011058
Chromosome Location	chr2:124947363-124947364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:124946899..124949400-chr2:124951253..124953326,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10496634	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11123027	0.94[CEU][hapmap]
rs11679836	0.84[EUR][1000 genomes]
rs11682281	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11682449	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11695218	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1170602	0.94[CEU][hapmap]
rs1170607	0.94[CEU][hapmap]
rs1170611	0.94[CEU][hapmap]
rs1170612	0.94[CEU][hapmap]
rs1170619	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1170621	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1170626	0.94[CEU][hapmap]
rs1170630	0.94[CEU][hapmap]
rs1184930	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11891838	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11899935	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11902121	1.00[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11902656	1.00[CEU][hapmap]
rs12473278	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12473309	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12987836	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13033123	1.00[CEU][hapmap]
rs13033298	1.00[CEU][hapmap]
rs13033474	1.00[CEU][hapmap]
rs1529298	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529299	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17011004	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17011031	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17011040	1.00[CEU][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2699359	0.92[CEU][hapmap]
rs2699360	0.91[CEU][hapmap]
rs35122611	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4848919	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4848920	0.94[CEU][hapmap]
rs56321724	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56369586	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57578864	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62163932	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62163933	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62163934	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs749196	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7561523	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7561939	0.94[CEU][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7571024	0.94[CEU][hapmap]
rs7584334	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7594531	0.94[CEU][hapmap]
rs7598484	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv874989	chr2:124892592-125176030	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124938600-124954400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:124947000-124947600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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