Variant report

Variant	rs12987520
Chromosome Location	chr2:234002367-234002368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233994958..233996944-chr2:234001777..234003720,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10176163	0.80[EUR][1000 genomes]
rs10179137	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10193128	0.83[EUR][1000 genomes]
rs10202748	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12694926	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12694927	0.80[EUR][1000 genomes]
rs12694928	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13011232	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13013293	0.80[EUR][1000 genomes]
rs13388142	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60306113	0.90[ASN][1000 genomes]
rs62192871	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62192872	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73105541	0.85[ASN][1000 genomes]
rs73105542	0.85[ASN][1000 genomes]
rs7419666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7589369	0.80[EUR][1000 genomes]
rs7597516	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7605743	0.81[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233984000-234003600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:233988600-234003400	Weak transcription	HUVEC	blood vessel
3	chr2:233989800-234003400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr2:233991200-234002800	Weak transcription	Left Ventricle	heart
5	chr2:233992000-234002600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:233994200-234002800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:233994600-234003000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr2:233995200-234003400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:233995200-234003600	Strong transcription	Primary B cells from peripheral blood	blood
10	chr2:233999400-234002800	Weak transcription	Placenta	Placenta
11	chr2:233999600-234002600	Weak transcription	Spleen	Spleen
12	chr2:234000200-234002800	Weak transcription	Adipose Nuclei	Adipose
13	chr2:234000200-234003400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:234000800-234003400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:234001000-234003400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:234001200-234004600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr2:234001200-234004800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr2:234001400-234003000	Weak transcription	Dnd41	blood
19	chr2:234001600-234002400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:234001600-234002800	Weak transcription	HepG2	liver
21	chr2:234001600-234003200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:234001600-234003200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:234001600-234003200	Weak transcription	Liver	Liver
24	chr2:234001600-234003200	Weak transcription	Thymus	Thymus
25	chr2:234001600-234003800	Weak transcription	Fetal Thymus	thymus
26	chr2:234001600-234004600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:234001600-234004800	Weak transcription	Primary T cells from cord blood	blood
28	chr2:234001600-234005000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr2:234001600-234005000	Weak transcription	GM12878-XiMat	blood
30	chr2:234001800-234002600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:234001800-234003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr2:234001800-234003400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr2:234001800-234004800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:234001800-234005000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr2:234002000-234004800	Weak transcription	Primary B cells from cord blood	blood
36	chr2:234002000-234004800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr2:234002200-234004800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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