Variant report

Variant	rs1298764
Chromosome Location	chr6:24412310-24412311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24312848..24315658-chr6:24411529..24413193,2	K562	blood:
2	chr6:24401831..24405466-chr6:24411328..24414223,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124532	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2753921	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2793452	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs793691	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793702	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24404000-24413000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:24404200-24413000	Weak transcription	Gastric	stomach
3	chr6:24404400-24412400	Weak transcription	Fetal Brain Male	brain
4	chr6:24404400-24412800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:24404400-24412800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:24404400-24413000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:24404600-24412400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:24404600-24412600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:24404600-24412600	Weak transcription	Stomach Mucosa	stomach
10	chr6:24404600-24412600	Weak transcription	Thymus	Thymus
11	chr6:24404600-24413000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:24404600-24413000	Weak transcription	Small Intestine	intestine
13	chr6:24404600-24413600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:24404600-24437400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:24404800-24412400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:24405000-24427600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:24405200-24412400	Weak transcription	Fetal Brain Female	brain
18	chr6:24405400-24412400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:24405400-24416800	Strong transcription	Liver	Liver
20	chr6:24405400-24426400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:24405400-24427000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:24405400-24427200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:24405400-24427200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:24405400-24427600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:24405400-24427600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:24405400-24428200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:24405600-24420000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:24405800-24412600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:24405800-24412600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:24405800-24412600	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:24405800-24412600	Weak transcription	Right Ventricle	heart
32	chr6:24405800-24423200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:24405800-24426400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:24406000-24413000	Weak transcription	Psoas Muscle	Psoas
35	chr6:24406000-24427000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:24406400-24427600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:24406600-24415400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:24406600-24427400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:24407400-24426600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:24407400-24427200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:24407600-24421000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:24407600-24426400	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr6:24407600-24426400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr6:24407600-24426600	Strong transcription	Placenta	Placenta
45	chr6:24407600-24427000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr6:24407600-24427600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:24407600-24428200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr6:24407800-24426600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:24407800-24427600	Strong transcription	Fetal Thymus	thymus
50	chr6:24408000-24412400	Weak transcription	Fetal Kidney	kidney

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