Variant report

Variant	rs2793452
Chromosome Location	chr6:24399007-24399008
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1298764	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2753921	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs793691	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24396000-24401200	Weak transcription	Hela-S3	cervix
2	chr6:24397600-24400000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:24397800-24399600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:24398400-24399600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:24398600-24400400	Enhancers	Placenta	Placenta
6	chr6:24398800-24400000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:24399000-24399600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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