Variant report
Variant | rs12989636 |
---|---|
Chromosome Location | chr2:31374230-31374231 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:31374076..31374959-chr2:31556105..31557134,5 | MCF-7 | breast: | |
2 | chr2:31368930..31370626-chr2:31374002..31376231,2 | K562 | blood: | |
3 | chr2:31374189..31375034-chr2:31392805..31393608,2 | MCF-7 | breast: | |
4 | chr2:31372563..31374637-chr2:31556201..31557717,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000158089 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10190164 | 1.00[JPT][hapmap] |
rs10201005 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11675787 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11684970 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12105231 | 0.82[ASN][1000 genomes] |
rs1562023 | 0.82[ASN][1000 genomes] |
rs17010764 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs2008535 | 0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59588353 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs60245472 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6543605 | 0.90[CEU][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs6543606 | 0.90[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes] |
rs6543607 | 1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs6543609 | 0.83[CHB][hapmap];0.95[JPT][hapmap] |
rs6706156 | 0.95[JPT][hapmap] |
rs6743542 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6747497 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7560152 | 0.85[CEU][hapmap];1.00[JPT][hapmap] |
rs7560583 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7564367 | 0.80[ASN][1000 genomes] |
rs7596724 | 1.00[JPT][hapmap] |
rs956747 | 0.80[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948552 | chr2:31118599-31595424 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
2 | nsv873771 | chr2:31363732-31416582 | Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv873772 | chr2:31363732-31417863 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv873773 | chr2:31363732-31426449 | Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv873774 | chr2:31363732-31432367 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv873775 | chr2:31363732-31439443 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |