Variant report

Variant	rs12989829
Chromosome Location	chr2:76585075-76585076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10084237	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169075	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170747	1.00[ASN][1000 genomes]
rs11126521	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673996	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896158	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328296	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476472	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477363	1.00[ASN][1000 genomes]
rs12987628	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005979	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014046	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414639	0.86[AFR][1000 genomes]
rs13418452	0.83[AFR][1000 genomes]
rs13432989	0.82[AFR][1000 genomes]
rs1358177	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358178	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358180	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358181	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401837	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401843	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401844	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405339	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405340	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405341	0.80[EUR][1000 genomes]
rs1405345	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519897	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526613	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526622	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526625	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526626	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526628	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526640	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526642	1.00[ASN][1000 genomes]
rs1526646	1.00[ASN][1000 genomes]
rs1526648	1.00[ASN][1000 genomes]
rs1526650	1.00[ASN][1000 genomes]
rs1526651	1.00[ASN][1000 genomes]
rs1526652	1.00[ASN][1000 genomes]
rs1526653	1.00[ASN][1000 genomes]
rs1609009	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852364	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880282	1.00[ASN][1000 genomes]
rs1880283	1.00[ASN][1000 genomes]
rs1880284	1.00[ASN][1000 genomes]
rs1949923	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980323	1.00[ASN][1000 genomes]
rs2049550	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090688	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139466	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139468	0.80[EUR][1000 genomes]
rs2139469	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860734	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860735	0.84[EUR][1000 genomes]
rs2860736	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860741	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860742	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961977	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980323	1.00[ASN][1000 genomes]
rs4241268	1.00[ASN][1000 genomes]
rs4444560	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852401	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852404	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853208	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853224	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853225	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853236	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4853237	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853239	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853240	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547060	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547062	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547063	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547072	0.83[AFR][1000 genomes]
rs6547073	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6547074	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547076	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547077	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547081	0.84[EUR][1000 genomes]
rs6714618	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718886	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725074	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731474	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738864	1.00[ASN][1000 genomes]
rs6742237	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743857	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747521	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758608	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7424136	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566339	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566454	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587657	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601253	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602197	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908960	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964439	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964440	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964441	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964443	0.84[EUR][1000 genomes]
rs975901	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv519947	chr2:76537604-76588942	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874313	chr2:76540365-76591470	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1008019	chr2:76542989-76586699	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2763343	chr2:76543001-76586711	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1014043	chr2:76544454-76585748	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1008178	chr2:76544454-76586332	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1003728	chr2:76544454-76586699	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv582223	chr2:76545193-76588942	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1011137	chr2:76547751-76586699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv874314	chr2:76548341-76598587	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv874315	chr2:76548341-76605834	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv874316	chr2:76548341-76613885	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv582224	chr2:76580601-76620126	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76584800-76586600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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